Leor Weinberger
Systems Biology, Virology, Single-Cell Imaging, and Computational Modeling
Contact Information
Member, Whitaker Center for Biomedical Engineering
Particiapting Member, Moores Cancer Center
Office: UH 5262
Phone: (858) 534-8671
Email: lsw@ucsd.edu
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Education and Appointments
2007 Postdoc, Princeton University
2004 Ph.D., University of California, Berkeley
1999 Los Alamos National Laboratory
1998 BSc., University of Maryland, College Park

Awards and Academic Honors
2009 W.M. Keck Foundation Research Excellence Award
2009 California HIV/AIDS Young Investigator Innovative Development Award
2009 Bill and Melinda Gates Grand Challenges in Global Health Explorations Award
2009 NIH DIrector's New Innovator Award
2008 Pew Scholar in the Biomedical Sciences
2006-2007 Lewis Thomas Fellow, Princeton University
1999-2004 Howard Hughes Medical Institute Pre-doctoral Fellow
1999 Eva Cota Robles Fellow, UC Berkeley
1999 UC Berkeley Chancellor's Opportunity Fellow
1998 Karyn Kupcinet Int'l Science Student, Weizmann Institute of Science

Research Interests
What are the fundamental molecular decisions that eventually lead cells down different developmental paths (such as cancerous transformation)? Genetic feedback circuits play an important role in regulating cell-fate decisions and the genetic feedback circuits of viruses present an unparalleled system to define the fundamental principles governing gene circuit behavior. (In fact, the first demonstration that a mammalian circuit harnesses stochastic-noise in gene-expression to control cell fate was made in HIV 1,2,3. )

My lab focuses on generating a quantitative understanding of the regulatory "master circuit" controlling the Human Immunodeficiency Virus (HIV) and the human herpesvirus cytomegalovirus (CMV, the leading cause of viral birth defects and transplant diseases). We use a coupled computational-experimental approach, that relies on real-time, live single-cell quantitative imaging coupled with mathematical modeling. Models allow us to predict which biochemical and genetic perturbations have the greatest impact upon a circuit's output. We are also developing a powerful techniques to probe unmapped genetic feedback architectures.

The successful development of quantitative gene circuit models may lead to novel classes of "kinetic" strategies and preventative vaccines. My lab is also interested in exploring one such proposed therapy strategy to "turn off" HIV infection 4,5,6. In general, we strive to develop the quantitative, analytical, and experimental imaging tools to construct gene circuit models and usher in a new era of quantitative understanding of biology and medical treatment.
Primary Research Area: Interdisciplinary Specialties:
Biochemistry Computational and Theoretical
Cellular Biochemistry
Biophysics

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Selected Publications
  • Press Articles

    Random Gene Expression Drives HIV into Hiding http://www.hhmi.org/news/weinberger.html
    Potential 'Off-Switch' For HIV Virus Found By Scientists http://www.medicalnewstoday.com/articles/60643.php
    The Virus Hijacker The Times of London (08/19/04) http://www.timesonline.co.uk/tol/life_and_style/health/article471610.ece

  • Weinberger LS, Schaffer DV, Arkin AP, "Theoretical design of a gene therapy to prevent AIDS but not human immunodeficiency virus type 1 infection." J Virol 18(10028-36): , 2003. [Go to PubMed]
  • Weinberger LS, Burnett JC, Toettcher JE, Arkin AP, Schaffer DV, "Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity." Cell 2(169-82): , 2005. [Go to PubMed]
  • Weinberger LS, Shenk T, "An HIV feedback resistor: auto-regulatory circuit deactivator and noise buffer." PLoS Biol 1(e9): , 2007. [Go to PubMed]
  • Weinberger LS, Dar RD, Simpson ML, "Transient-mediated fate determination in a transcriptional circuit of HIV." Nat Genet 4(466-70): , 2008. [Go to PubMed]
  • Weinberger AD, Perelson AS, Ribeiro RM, Weinberger LS, "Accelerated immunodeficiency by anti-CCR5 treatment in HIV infection." PLoS Comput Biol 8(e1000467): , 2009. [Go to PubMed]
  • Singh A, Weinberger LS, "Stochastic gene expression as a molecular switch for viral latency." Curr Opin Microbiol 4(460-6): , 2009. [Go to PubMed]